phyloseq (version 1.16.2)

phy_tree<-: Assign a (new) phylogenetic tree to x

Description

Assign a (new) phylogenetic tree to x

Usage

phy_tree(x) <- value
## S3 method for class 'phyloseq,phylo':
phy_tree(x) <- value
## S3 method for class 'phyloseq,phyloseq':
phy_tree(x) <- value

Arguments

x

(Required). phyloseq-class

value

(Required). phylo-class, or phyloseq-class

Examples

#
data("esophagus")
# An example of pruning to just the first 20 taxa in esophagus
ex2a <- prune_taxa(taxa_names(esophagus)[1:20], esophagus)
# The following 3 lines produces an ex2b that is equal to ex2a
ex2b <- ex2a
phy_tree(ex2b) <- phy_tree(esophagus)
identical(ex2a, ex2b)